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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12180228_12180620_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12180228 - 12180620
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCCGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCGTCCTCATCA
Flanking Amino Acid:
KSAAGSFKGKILFIFIDSDH
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
70.3
0.46
1
71.6
26.9
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
49.8
-0
1.9
59.05
46.7

Associated Gene:

Gene:
P4HB
Ensembl Gene ID:
ENSAPLG00000014245
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014865
12176613 - 12190875
14263