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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12180747_12181024_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12180747 - 12181024
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTATTTTCTACT
Flanking Amino Acid:
LPLVIEFTEQTAPKIFGGEI
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.9
35.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.5
0.66
0.8
77.3
31.1
Minor 5ss
28.5
-2.5
3.4
40.8
45.6
Minor BPS
53.7
0.2
1.8
76.36
40.2

Associated Gene:

Gene:
P4HB
Ensembl Gene ID:
ENSAPLG00000014245
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014865
12176613 - 12190875
14263