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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12185244_12190850_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12185244 - 12190850
Intron Length:
5607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTCCC
5'SS Class:
major
3'SS Sequence:
GCCCCGCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAC
U12 Branch Point Sequence:
CGGTCCGTGACG
Flanking Amino Acid:
ALACPHQRDAPWCGHCKA
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.7
37.5
Major BPS
48.6
-0
1.2
40.4
40
Major PPT
61.4
0.26
0.9
53.3
31
Minor 5ss
30.1
-2.3
2.7
36.9
40.1
Minor BPS
48.9
-0.2
2.2
54.87
46.5

Associated Gene:

Gene:
P4HB
Ensembl Gene ID:
ENSAPLG00000014245
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014865
12176613 - 12190875
14263