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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12192943_12193387_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12192943 - 12193387
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
GCTTCCCTACAT
Flanking Amino Acid:
IQHTFRKGVKIDKTEYMVGS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
69.9
0.49
1
61.3
37
Major PPT
83.2
0.75
0.7
77.2
31.6
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
49.2
0.02
2.1
70.82
45.4

Associated Gene:

Gene:
ARHGDIA
Ensembl Gene ID:
ENSAPLG00000017298
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035429
12191211 - 12194798
3588
ENSAPLT00000019743
12191211 - 12194818
3608