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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12194390_12194608_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12194390 - 12194608
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCCCT
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAG
U12 Branch Point Sequence:
TGTTTGAGAGCC
Flanking Amino Acid:
ALLGAVTVTADPNAPNVVVT
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62.3
43.9
Major BPS
54.7
0.12
1.7
57.1
49.4
Major PPT
81.3
0.7
0.8
73.6
37
Minor 5ss
34.6
-1.7
3.1
40.8
45
Minor BPS
39.8
-0.7
2.3
56.77
41.4

Associated Gene:

Gene:
ARHGDIA
Ensembl Gene ID:
ENSAPLG00000017298
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019743
12191211 - 12194818
3608