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Intron Name: Anas_platyrhynchos_platyrhynchos_19_12207487_12207647_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

12207487 - 12207647

Intron Length:

161

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

CGGCGCCCCGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTATAAA

U12 Branch Point Sequence:

CGGGCTATAAAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

67.3

36.7

Major BPS

66.3

0.4

1.1

34.4

Major PPT

58.9

0.2

0.9

50.3

34.1

Minor 5ss

32.2

-2

3.4

43.3

Minor BPS

43.1

-0.6

1.8

41.75

Associated Gene:

Gene:

NPB

Ensembl Gene ID:

ENSAPLG00000022175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043157

12206997 - 12208333

1337