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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12213761_12214246_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12213761 - 12214246
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGTTTTTCACA
Flanking Amino Acid:
SDKDGSDPYEEPKRRGIFQL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.4
0.71
0.9
75.8
38.1
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
57.8
0.24
1.7
68.54
38.5

Associated Gene:

Gene:
PCYT2
Ensembl Gene ID:
ENSAPLG00000014755
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015421
12211664 - 12220020
8357