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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12217926_12218990_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12217926 - 12218990
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTCAC
5'SS Class:
major
3'SS Sequence:
TATCTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATTCTTTATCT
Flanking Amino Acid:
LMTKAHHSNIDEDLDYRKHT
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
63.9
36.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.6
0.71
0.8
78.3
30.1
Minor 5ss
30.9
-2.2
2.9
37.2
34.9
Minor BPS
69.3
0.69
1.6
81.99
39.3

Associated Gene:

Gene:
PCYT2
Ensembl Gene ID:
ENSAPLG00000014755
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015421
12211664 - 12220020
8357