Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12263023_12263594_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12263023 - 12263594

Intron Length:

572

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAATCA

5'SS Class:

major

3'SS Sequence:

CTTTGTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

ATGACATTCATT

Flanking Amino Acid:

APTEAIRRGIRYWNGIVPER

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.52

1.1

64.9

35.7

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

85.5

0.8

76.9

37.3

Minor 5ss

36.5

-1.5

3.3

48.6

Minor BPS

-0

68.25

42.7

Associated Gene:

Gene:

NOTUM

Ensembl Gene ID:

ENSAPLG00000015427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037340

12259389 - 12268200

8812

ENSAPLT00000016080

12261714 - 12265342

3629