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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12264650_12265317_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12264650 - 12265317
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCCTA
5'SS Class:
major
3'SS Sequence:
GTCTCTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTTTTATTGATG
Flanking Amino Acid:
MYTAVKERDEYAFMGALI
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
43.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.6
0.62
0.9
68.7
42
Minor 5ss
40.1
-1.1
3.4
55.6
48.6
Minor BPS
56.2
0.05
1.7
63.81
38.2

Associated Gene:

Gene:
NOTUM
Ensembl Gene ID:
ENSAPLG00000015427
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016080
12261714 - 12265342
3629