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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12264650_12266034_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12264650 - 12266034
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTTTTATTGATG
Flanking Amino Acid:
WSGASSKSEKNEYAFMGALI
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
84.1
26.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.6
0.62
0.9
68.7
42
Minor 5ss
34.9
-1.7
3.4
49.4
41.3
Minor BPS
56.2
0.05
1.7
63.81
38.2

Associated Gene:

Gene:
NOTUM
Ensembl Gene ID:
ENSAPLG00000015427
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037340
12259389 - 12268200
8812