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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12318641_12319376_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12318641 - 12319376
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATTTTAAAC
Flanking Amino Acid:
VVHFGSEERRDCYLKSDLLS
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.7
0.6
1
74.3
39.2
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
67.7
0.53
1.4
75.88
33.9

Associated Gene:

Gene:
LRRC45
Ensembl Gene ID:
ENSAPLG00000015594
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016161
12273201 - 12337971
64771
ENSAPLT00000041920
12273201 - 12339085
65885