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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12327750_12328447_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12327750 - 12328447
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATTTACTGATCA
Flanking Amino Acid:
NTTVKSLDLKGNNLRTMGAE
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
83.3
0.75
0.9
80.8
36.2
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
54.8
0.15
1.9
72.2
39.2

Associated Gene:

Gene:
LRRC45
Ensembl Gene ID:
ENSAPLG00000015594
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026244
12319377 - 12337971
18595
ENSAPLT00000016291
12321569 - 12339085
17517
ENSAPLT00000016161
12273201 - 12337971
64771
ENSAPLT00000041920
12273201 - 12339085
65885