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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12329814_12330479_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12329814 - 12330479
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
TCTCTCTGCATC
Flanking Amino Acid:
NVPSDILKAVEQALDHNQDR
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.7
44.5
Major BPS
62.2
0.3
1
59
38
Major PPT
71
0.47
0.9
69.9
35.2
Minor 5ss
34.7
-1.7
2.6
34.3
41.4
Minor BPS
47.3
-0.2
1.9
59.85
39.8

Associated Gene:

Gene:
LRRC45
Ensembl Gene ID:
ENSAPLG00000015594
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041920
12273201 - 12339085
65885
ENSAPLT00000026244
12319377 - 12337971
18595
ENSAPLT00000016291
12321569 - 12339085
17517
ENSAPLT00000016161
12273201 - 12337971
64771