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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12331208_12332314_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12331208 - 12332314
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CTTCCTTCAAAA
Flanking Amino Acid:
KQREEIARSGRLQMTEAALA
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
83.8
0.76
0.8
80.6
31.5
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
54.7
0.14
1.7
66.41
39.8

Associated Gene:

Gene:
LRRC45
Ensembl Gene ID:
ENSAPLG00000015594
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016161
12273201 - 12337971
64771