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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12331398_12332314_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12331398 - 12332314
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CTTCCTTCAAAA
Flanking Amino Acid:
QHSIMNSVKAKLQMTEAALA
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
59.8
44.7
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
83.8
0.76
0.8
80.6
31.5
Minor 5ss
39.5
-1.2
3.1
48
42.4
Minor BPS
54.7
0.14
1.7
66.41
39.8

Associated Gene:

Gene:
LRRC45
Ensembl Gene ID:
ENSAPLG00000015594
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041920
12273201 - 12339085
65885
ENSAPLT00000026244
12319377 - 12337971
18595
ENSAPLT00000016291
12321569 - 12339085
17517