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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12342463_12343079_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12342463 - 12343079
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
TGTTCCCTAATA
Flanking Amino Acid:
RLRPLSYPQTDVFLICFSLV
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
82
0.72
0.8
76.7
32.1
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
71.8
0.68
1.6
81.2
33.9

Associated Gene:

Gene:
RAC3
Ensembl Gene ID:
ENSAPLG00000015982
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016679
12341990 - 12345029
3040