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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12343143_12343624_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12343143 - 12343624
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
ATCTCTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTTCTCATCA
Flanking Amino Acid:
PASFENVRAKWYPEVRHHCP
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.8
0.67
0.9
76.9
36.7
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
56.8
0.21
1.8
70.93
41.6

Associated Gene:

Gene:
RAC3
Ensembl Gene ID:
ENSAPLG00000015982
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016679
12341990 - 12345029
3040