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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12343785_12343901_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12343785 - 12343901
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAG
U12 Branch Point Sequence:
TTGAGCTGGAGC
Flanking Amino Acid:
PQGLAMAREIGSVKYLECSA
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
45.8
-0.2
1.7
42.8
49.4
Major PPT
76.1
0.59
0.7
69.5
31.3
Minor 5ss
33.8
-1.8
3
45.5
42.6
Minor BPS
42.7
-0.5
2.2
54.91
43.6

Associated Gene:

Gene:
RAC3
Ensembl Gene ID:
ENSAPLG00000015982
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016679
12341990 - 12345029
3040