Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12345305_12345839_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12345305 - 12345839

Intron Length:

535

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTATA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTGATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TATGTTTTGATT

Flanking Amino Acid:

INRIPLGKFAEVDDVVNSIL

Intron Amino Acid Position:

213

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

1.2

87.1

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

81.4

0.71

0.9

78.1

40.1

Minor 5ss

34.7

-1.7

2.7

42.8

Minor BPS

61.1

0.43

1.3

74.42

37.1

Associated Gene:

Gene:

RFNG

Ensembl Gene ID:

ENSAPLG00000016029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026270

12345201 - 12354385

9185

ENSAPLT00000016730

12345009 - 12348608

3600