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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12346731_12352581_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12346731 - 12352581
Intron Length:
5851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTATCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTTAAAT
Flanking Amino Acid:
GVFGLQQDPTRCLDVNLRAV
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.7
0.49
0.8
66.7
34.1
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
68.6
0.66
1.3
78.99
36.6

Associated Gene:

Gene:
RFNG
Ensembl Gene ID:
ENSAPLG00000016029
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026270
12345201 - 12354385
9185