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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12348470_12348550_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12348470 - 12348550
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCCGGG
5'SS Class:
weak_major
3'SS Sequence:
AGTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GCTGACGCAGTC
Flanking Amino Acid:
RRALVTGAGKGIGRAVAVAL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.2
45
45.1
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
69.9
0.45
0.9
62.8
33.8
Minor 5ss
34.4
-1.8
3.6
46.4
49
Minor BPS
33.8
-1.2
2.2
39.86
39.8

Associated Gene:

Gene:
RFNG
Ensembl Gene ID:
ENSAPLG00000016029
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016730
12345009 - 12348608
3600