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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12352668_12354020_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12352668 - 12354020
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AATTTCTGAATG
Flanking Amino Acid:
RLRGESVLQQVTLSYGDPEN
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.6
42.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
32.9
-1.9
3.6
46.5
48.8
Minor BPS
61.9
0.24
1.5
63.69
38.2

Associated Gene:

Gene:
RFNG
Ensembl Gene ID:
ENSAPLG00000016029
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026270
12345201 - 12354385
9185