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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12354187_12354272_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12354187 - 12354272
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
TGTACTCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTTCCTGTACT
Flanking Amino Acid:
GLALKMSPWASLGNFMSTAE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.9
0.67
0.9
72.8
37.4
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
67.5
0.63
1.8
86.31
39

Associated Gene:

Gene:
RFNG
Ensembl Gene ID:
ENSAPLG00000016029
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026270
12345201 - 12354385
9185