About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12358233_12360664_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12358233 - 12360664
Intron Length:
2432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCGC
5'SS Class:
major
3'SS Sequence:
TTTGCTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTACCACATTT
Flanking Amino Acid:
PLPVQVFNLQGAVEPMQIDV
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
59.1
42.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
82.7
0.74
0.9
74.2
40.2
Minor 5ss
30
-2.3
3.4
42
44.8
Minor BPS
47.7
-0
2.1
74.31
42.4

Associated Gene:

Gene:
GPS1
Ensembl Gene ID:
ENSAPLG00000016288
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017010
12357973 - 12368297
10325