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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12360758_12361684_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12360758 - 12361684
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
CTTTCTAAGACT
Flanking Amino Acid:
INYVVENPTLDLEQYASSYS
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.2
35.6
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
89
0.88
0.7
84.2
30.7
Minor 5ss
41.6
-0.9
3.1
55.7
43.9
Minor BPS
50.7
0.1
2
75.58
41.7

Associated Gene:

Gene:
GPS1
Ensembl Gene ID:
ENSAPLG00000016288
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017010
12357973 - 12368297
10325