About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12363259_12363453_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12363259 - 12363453
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AGTATTGTAATT
Flanking Amino Acid:
YKGNSIKESIRRGHDDLGDH
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
74.1
0.54
0.9
64.9
41.3
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
48.3
-0
2
66.94
38.4

Associated Gene:

Gene:
GPS1
Ensembl Gene ID:
ENSAPLG00000016288
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017010
12357973 - 12368297
10325