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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12363831_12364232_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12363831 - 12364232
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGCCC
5'SS Class:
major
3'SS Sequence:
TCTCATCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTCATCC
Flanking Amino Acid:
KAESTPEIAEQRGERDSQTQ
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.2
37.5
Major BPS
100
1.24
0.5
100
0
Major PPT
76.6
0.6
0.8
74.1
30.7
Minor 5ss
33.7
-1.9
3.3
43.7
37.6
Minor BPS
63.2
0.39
1.8
78.26
37.5

Associated Gene:

Gene:
GPS1
Ensembl Gene ID:
ENSAPLG00000016288
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017010
12357973 - 12368297
10325