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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12364294_12364629_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12364294 - 12364629
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TGCAACATAACA
Flanking Amino Acid:
AILTKLKCAAGLAELAARKY
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
79.1
0.66
0.8
72.7
37.5
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
49.7
-0
1.9
63.36
42.1

Associated Gene:

Gene:
GPS1
Ensembl Gene ID:
ENSAPLG00000016288
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017010
12357973 - 12368297
10325