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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12365233_12366330_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12365233 - 12366330
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAT
5'SS Class:
strong_major
3'SS Sequence:
CGTTTATCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TCACGTTTATCT
Flanking Amino Acid:
QELQRNVISSSSFKLFLELE
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
32.7
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
76
0.58
0.8
70.5
35.2
Minor 5ss
39.9
-1.1
3.3
57.8
46.8
Minor BPS
47.8
-0
2
65.73
45

Associated Gene:

Gene:
GPS1
Ensembl Gene ID:
ENSAPLG00000016288
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017010
12357973 - 12368297
10325