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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12366437_12366849_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12366437 - 12366849
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTCTTGCACA
Flanking Amino Acid:
SCLKMLDEMKDNLLLDMYLA
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77
0.61
0.9
72.5
37.1
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
58.3
0.25
1.9
74.52
37

Associated Gene:

Gene:
GPS1
Ensembl Gene ID:
ENSAPLG00000016288
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017010
12357973 - 12368297
10325