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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12366931_12367059_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12366931 - 12367059
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
GTCAACTGAATA
Flanking Amino Acid:
TQIRNRALIQYFSPYVSADM
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
87.2
27.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
87.2
0.84
0.6
81
31.1
Minor 5ss
38.7
-1.3
3.4
58.4
46.2
Minor BPS
49.2
-0
1.7
59.09
40.3

Associated Gene:

Gene:
GPS1
Ensembl Gene ID:
ENSAPLG00000016288
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017010
12357973 - 12368297
10325