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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12367495_12368222_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12367495 - 12368222
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ACATCACTAACT
Flanking Amino Acid:
AVLRNQIHVKSPPREGSQGE
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.2
37.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
37.9
-1.4
3.6
56.2
48.2
Minor BPS
54.5
0.22
2
73.69
42.4

Associated Gene:

Gene:
GPS1
Ensembl Gene ID:
ENSAPLG00000016288
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017010
12357973 - 12368297
10325