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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12375831_12376193_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12375831 - 12376193
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
RAFKETADCPGHGLLFKTKY
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
100
1.24
0.5
100
0
Major PPT
86.5
0.82
0.7
84.5
23.3
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
DUS1L
Ensembl Gene ID:
ENSAPLG00000001965
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002078
12375630 - 12387608
11979