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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12377219_12377788_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12377219 - 12377788
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
CTGTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TATTCCTAAAAT
Flanking Amino Acid:
PNKSFDPSLKPKYAKCDQCG
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.3
75.8
35
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
85.1
0.79
0.8
80.2
31.8
Minor 5ss
42.8
-0.8
2.7
53.4
36.8
Minor BPS
70.2
0.71
1.8
86.76
38.5

Associated Gene:

Gene:
DUS1L
Ensembl Gene ID:
ENSAPLG00000001965
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002078
12375630 - 12387608
11979