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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12377956_12378197_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12377956 - 12378197
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TACACCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTTCCCTTCAGC
Flanking Amino Acid:
HWICQPYIRPGPKERCKENG
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.1
30.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
71.4
0.48
0.9
66.7
38.8
Minor 5ss
36
-1.6
2.9
40.8
45.4
Minor BPS
53
0.08
2.1
67.56
44.2

Associated Gene:

Gene:
DUS1L
Ensembl Gene ID:
ENSAPLG00000001965
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002078
12375630 - 12387608
11979