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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12378748_12379466_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12378748 - 12379466
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
GAATTTGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTTTGAATT
Flanking Amino Acid:
RAHLFKLWHHTLQVYQQLRE
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
81.3
32.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69
0.43
1
65.6
44.9
Minor 5ss
36.2
-1.6
2.8
45
36
Minor BPS
61.8
0.45
1.4
74.34
37.1

Associated Gene:

Gene:
DUS1L
Ensembl Gene ID:
ENSAPLG00000001965
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002078
12375630 - 12387608
11979