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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12380649_12380839_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12380649 - 12380839
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCACTGGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTTTTATTCACT
Flanking Amino Acid:
VASWEHIQAVRKAVSIPVFA
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
73.5
37.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
66
0.36
1
60.7
40.2
Minor 5ss
28.4
-2.5
2.9
31.8
42.6
Minor BPS
58.3
0.34
2
81.55
39.8

Associated Gene:

Gene:
DUS1L
Ensembl Gene ID:
ENSAPLG00000001965
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002078
12375630 - 12387608
11979