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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12393998_12394115_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12393998 - 12394115
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGAGACTTAAAC
Flanking Amino Acid:
QQFTGIEYNKLLEILLPLKD
Intron Amino Acid Position:
2385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.6
0.71
0.8
74.5
40.1
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
53.3
0.08
1.7
62.76
41.8

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290