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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12395018_12395480_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12395018 - 12395480
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTCAG
5'SS Class:
major
3'SS Sequence:
TTTCATGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTGTTTCTAACT
Flanking Amino Acid:
MPCYGLQCTKAAPLDSIQSL
Intron Amino Acid Position:
2278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.2
61.5
44.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.5
0.62
0.9
69.7
41.2
Minor 5ss
45.2
-0.5
2.6
58.1
46.5
Minor BPS
59.5
0.38
1.7
75.52
41.8

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290