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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12399221_12399372_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12399221 - 12399372
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCCTTCTCCATT
Flanking Amino Acid:
AKYSGTLHLDWVTRKKCPDL
Intron Amino Acid Position:
2008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
78.1
36.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
66
0.36
1
63.8
36.1
Minor 5ss
39.4
-1.2
3
50.9
40.1
Minor BPS
48.4
-0
2
66.82
44.9

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290