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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12399465_12399950_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12399465 - 12399950
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACCCTTCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAACC
Flanking Amino Acid:
PVGGIFNLAVVLRDAMIENQ
Intron Amino Acid Position:
1978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.4
0.3
0.9
58.7
30.9
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
63.7
0.41
1.6
73.03
38.7

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290