About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12400103_12401151_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12400103 - 12401151
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGACAT
U12 Branch Point Sequence:
ACATCGTTCACT
Flanking Amino Acid:
VLTSRSGIRTGYQAKCVREW
Intron Amino Acid Position:
1927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
59.8
0.24
1.2
67
39.8
Major PPT
85
0.79
0.8
84.9
29.9
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
49.1
0.01
2.4
70.84
45.9

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290