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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12403158_12403305_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12403158 - 12403305
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAACT
5'SS Class:
major
3'SS Sequence:
TCTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTCTTTCATT
Flanking Amino Acid:
QHVLRVTNGKGVNLVLNSLA
Intron Amino Acid Position:
1744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
72
37.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.7
0.83
0.7
81.6
28.7
Minor 5ss
38.6
-1.3
2.7
51
45.1
Minor BPS
67.7
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290