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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12403426_12403977_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12403426 - 12403977
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
TTCTCTTGTACT
Flanking Amino Acid:
SMGCRVFTTVGSAEKRQYLQ
Intron Amino Acid Position:
1704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.5
33.9
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
75.5
0.57
0.9
66.7
39.6
Minor 5ss
31.5
-2.1
3
42.7
44.3
Minor BPS
60.5
0.41
1.8
80.62
41.2

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290