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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12404838_12405821_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12404838 - 12405821
Intron Length:
984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TACCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTGTAAAA
Flanking Amino Acid:
TGKLSPDAIPGNWASQQCML
Intron Amino Acid Position:
1594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
72.9
34.4
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.8
80.7
30.9
Minor 5ss
43.3
-0.7
2.9
52.2
46
Minor BPS
47.9
-0.1
2
60.32
40

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290