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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12406026_12406370_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12406026 - 12406370
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATAAAGTTAATC
Flanking Amino Acid:
GSFRHLPLQQGQPQELTEYA
Intron Amino Acid Position:
1526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
85.5
0.8
0.7
80.5
24.7
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
46.9
-0.2
2.2
59.61
39.2

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290