Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12406526_12406628_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12406526 - 12406628

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAAAAG

5'SS Class:

major

3'SS Sequence:

TCTTGGCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATAAT

U12 Branch Point Sequence:

TACACCAAAACT

Flanking Amino Acid:

LRLEAEGHRVRCVFVSNLNP

Intron Amino Acid Position:

1474

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

65.1

40.7

Major BPS

66.4

0.41

1.1

66.3

36.5

Major PPT

74.8

0.56

0.9

65.8

40.9

Minor 5ss

31.1

-2.2

3.2

39.5

Minor BPS

49.7

0.05

71.02

45.2

Associated Gene:

Gene:

FASN

Ensembl Gene ID:

ENSAPLG00000002703

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002873

12392579 - 12428868

36290