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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12406748_12406962_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12406748 - 12406962
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
CCTGGCAAAACA
Flanking Amino Acid:
THYKWVESLKEILADQSEQP
Intron Amino Acid Position:
1435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
79.4
0.66
0.8
73.9
36.8
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
40.7
-0.7
2.3
51.13
46.7

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290