Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12407128_12409003_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12407128 - 12409003

Intron Length:

1876

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATATC

5'SS Class:

strong_major

3'SS Sequence:

TGTGATTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CAAACTTTAATT

Flanking Amino Acid:

LQQKHSFLSQAQWEGLFSKA

Intron Amino Acid Position:

1380

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.8

87.7

26.2

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

69.7

0.44

1.1

64.7

45.5

Minor 5ss

39.6

-1.2

2.9

43.3

Minor BPS

64.1

0.52

1.3

70.58

40.6

Associated Gene:

Gene:

FASN

Ensembl Gene ID:

ENSAPLG00000002703

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002873

12392579 - 12428868

36290